Output list
Journal article
First online publication 11/19/2025
Scientific Reports, 15, 1, 40798
Journal article
First online publication 08/20/2025
Communications Materials, 6, 1, 190
Journal article
First online publication 07/15/2025
STAR Protocols, 6, 3, 103969
Journal article
First online publication 05/26/2025
Chem Catalysis, 101399
Journal article
Machine Learning Framework for Conotoxin Class and Molecular Target Prediction
First online publication 11/03/2024
Toxins, 16, 11, 475
Journal article
A High-Throughput Screening Platform for Engineering Poly(ethylene Terephthalate) Hydrolases
Published 10/04/2024
ACS catalysis, 14, 19, 14622 - 14638
The ability of enzymes to hydrolyze the ubiquitous polyester, poly(ethylene terephthalate) (PET), has enabled the potential for bioindustrial recycling of this waste plastic. To date, many of these PET hydrolases have been engineered for improved catalytic activity and stability, but current screening methods have limitations in screening large libraries, including under high-temperature conditions. Here, we developed a platform that can simultaneously interrogate PET hydrolase libraries of 10(4)-10(5) variants (per round) for protein solubility, thermostability, and activity via paired, plate-based split green fluorescent protein and model substrate screens. We then applied this platform to improve the performance of a benchmark PET hydrolase, leaf-branch compost cutinase, by directed evolution. Our engineered enzyme exhibited higher catalytic activity relative to the benchmark, LCC-ICCG, on amorphous PET film coupon substrates (similar to 9.4% crystallinity) in pH-controlled bioreactors at both 65 degrees C (8.5% higher conversion at 48 h and 38% higher maximum rate, at 2.9% substrate loading) and 68 degrees C (11.2% higher conversion at 48 h and 43% higher maximum rate, at 16.5% substrate loading), up to 48 h, highlighting the potential of this screening platform to accelerate enzyme development for PET recycling.
Journal article
Engineering highly stable variants of Corynactis californica green fluorescent proteins
Published 02/2024
Protein Science, 33, 2, e4886
Journal article
Conotoxin Prediction: New Features to Increase Prediction Accuracy
Published 11/2023
Toxins, 15, 11, 641
Journal article
Engineering an efficient and bright split Corynactis californica green fluorescent protein
Published 12/2021
Scientific Reports, 11, 1, 18440
Journal article
Rational design of antimicrobial peptides targeting Gram-negative bacteria
Published 06/2021
Computational Biology and Chemistry, 92, 107475